Observation_social_history_pregnancy

Source file: observation_social_history_pregnancy.py

Root XPath

./hl7:component/hl7:structuredBody/hl7:component/hl7:section/hl7:templateId[@root='2.16.840.1.113883.10.20.22.2.17']/../hl7:entry/hl7:observation/hl7:templateId[@root='2.16.840.1.113883.10.20.15.3.8']/..

Expected OMOP domain: Observation

Fields

Field

Type

Order

Details

observation_id

HASH

1

hash(person_id, provider_id, observation_concept_code, observation_concept_codeSystem, observation_date, observation_datetime, value_as_string, value_as_number, value_as_concept_id, observation_id_extension, observation_id_root, unit_source_value)

person_id

FK

2

FK → person_id

observation_concept_id

DERIVED

3

VT.codemap_xwalk_concept_id(concept_code=observation_concept_code, vocabulary_oid=observation_concept_codeSystem)

observation_date

FIELD

4

hl7:effectiveTime/hl7:value @value [DATE]

observation_datetime

PRIORITY

5

coalesce candidates by priority

observation_type_concept_id

CONSTANT

6

32035

value_as_number

None

7

—

value_as_string

None

8

—

value_as_concept_id

DERIVED

9

VT.codemap_xwalk_concept_id(concept_code=value_as_code, vocabulary_oid=value_as_codeSystem)

qualifier_concept_id

None

10

—

unit_concept_id

None

11

—

provider_id

None

12

—

visit_occurrence_id

FK

13

FK → visit_occurrence_id

visit_detail_id

None

14

—

observation_source_value

FIELD

15

hl7:code @code

observation_source_concept_id

None

16

—

unit_source_value

None

17

—

qualifier_source_value

None

18

—

data_partner_id

DERIVED

22

VT.get_data_partner_id(filename=filename)

filename

FILENAME

100

source XML filename

cfg_name

CONSTANT

101

Observation_social_history_pregnancy

domain_id

DERIVED

VT.codemap_xwalk_domain_id(concept_code=observation_concept_code, vocabulary_oid=observation_concept_codeSystem)

observation_concept_code

CONSTANT

289908002

observation_concept_codeSystem

CONSTANT

2.16.840.1.113883.6.96

observation_datetime_effectiveTime

FIELD

hl7:effectiveTime @value [DATETIME_LOW] → priority [‘observation_datetime’, 1]

observation_datetime_high

FIELD

hl7:effectiveTime/hl7:high @value [DATETIME_HIGH] → priority [‘observation_datetime’, 3]

observation_datetime_low

FIELD

hl7:effectiveTime/hl7:low @value [DATETIME_LOW] → priority [‘observation_datetime’, 2]

observation_id_extension

FIELD

hl7:id[not(@nullFlavor="UNK")] @extension

observation_id_root

FIELD

hl7:id[not(@nullFlavor="UNK")] @root

value_as_code

FIELD

hl7:value @code

value_as_codeSystem

FIELD

hl7:value @codeSystem

Config type reference

config_type

Meaning

ROOT

Defines the XPath root element for this config

FIELD

Extracts an XML attribute value via XPath

DERIVED

Computed by a Python function from other fields

HASH

MD5/hash of a set of fields, used as a surrogate key

FK

Foreign key copied from a joined dataset

CONSTANT

Fixed literal value written to every row

PRIORITY

Coalesces the first non-null value from prioritized candidates

FILENAME

The source XML filename

None

Not populated (placeholder)